Marine Ecosystem Response
Research Interests Lab website
My research
focuses on marine ecosystem responses; understanding relationships between organisms
and their environment and specific biological and
physiological responses to environmental change. In particular, I am interested in the mechanisms by
which anthropogenic-driven perturbations
affect coastal habitats and species. I give special focus to commercially important
coastal bivalves and horseshoe crabs.
I use a
variety of approaches to make these assessments. I measure how perturbations affect habitat and food
quality for consumers, and then determine the extent to
which these effects may be transferred up coastal food webs
in terms of change in growth, survival, and physiology. I also employ natural abundance stable isotopes to
trace N and C sources from consumers to their food sources
and ultimately to N and C sources from land. I use this information to discern trophic
interactions, define linkages between anthropogenic
factors and organism responses, assess
nutritional importance of food sources, discern
physiological state of organisms, and historically trace
responses to environmental change.
Specific
Research Topic
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Population ecology of West Indian manatees in Alabama waters
a. A model for conservation management by integration of
research and public outreach
b. Use of telemetry and GPS to monitor West Indian manatee
movements in Alabama waters
c. Use of tagging and necropsy data to define movements and
diet of Alabama manatees
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Factors affecting ecology and physiology of bivalves in nGOM waters (and elsewhere)
a. Use of N stable isotope ratios in bivalve shell to trace anthropogenic
N sources.
b. Effects of N enrichment on oyster growth and survival in Mobile Bay, AL
c. Use of stable isotope ratios to ink wastewater sources to effects on
shellfish and human health: Defining relevant and effective spatial and
temporal scales for management
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The trophic importance of land-driven organic matter
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Using molts to evaluate fringe horseshoe crab populations in Downeast
Maine and the northern Gulf of Mexico
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Development and integration of metadata and research data retention
at DISL
Courses
Selected Current Research Grants
2009 -2011 |
Alabama Oyster Reef Restoration Program, University of South Alabama, Quantification of direct and indirect nitrogen removal by oysters (Crassostrea virginica) (Co-PI) |
2009 - 2011 |
Shelby Center, From Mobile Bay to nGOM fisheries: The trophic importance of land-derived organic matter (PI) |
2009 - 2010 |
Alabama Division of Conservation and Natural Resources, Linking nutrient source to harmful algal blooms in Little Lagoon, AL (Co-PI) |
2009 - 2010 |
Alabama Division of Wildlife and Freshwater Fisheries, Population Ecology of West Indian manatees in Alabama waters (PI) |
2009 - 2010 |
NOAA/NCDDC, Data Management in Support of NOAA’s Integrated Ecosystem Assessment for the Gulf of Mexico through the NGI Ecosystem Data Assembly Center (PI) |
2008 - 2010 |
MS-AL Sea Grant Consortium, Use of stable isotope ratios to link wastewater sources to effects on shellfish and human health: Defining relevant and effective spatial and temporal scales for management (PI) |
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Past Research Grants
2008 - 2009 |
Alabama Division of Wildlife and Freshwater Fisheries, Use of telemetry and GPS to monitor West Indian manatee movements in Alabama waters (PI) |
2008 - 2009 |
Mobile Bay National Estuary Program, Study of the West Indian manatee population in Mobile Bay, AL: A model for conservation management by integration of research and public outreach (PI) |
2007 - 2009 |
NOAA/NCDDC, Development and integration of metadata and research data retention at Dauphin Island Sea Lab (Co-PI) |
2007 - 2009 |
Alabama Oyster Reef Restoration Program, Univ. of South Alabama, Effects of N enrichment on oyster growth and survival via changes in food supply and habitat in Mobile Bay, AL (PI) |
2007 - 2008 |
Alabama Division of Wildlife and Freshwater Fisheries, A pilot study of the extralimital West Indian Manatee population in Mobile Bay, AL (PI) |
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Selected
Publications
2010
Kovacs, C., J. Daskin, H. Patterson, and R. H. Carmichael. Crassostrea
virginica shells record local variation in wastewater inputs to a coastal
estuary. Aquatic Biol. 9:77-84.
Carmichael, R. H. and C. Kovacs. Comment on Watanabe et al. 2009.
Mar. Pollut. Bull. 60: 314-315.
2009
Pabody, C., R. H. Carmichael, L. Rice, and M. Ross. West Indian manatees in
Mobile Bay, Alabama: A new sighting network adds to twenty years of
historical data on extralimital populations. Gulf Mexico Sci. 27:52-61.
Carmichael, R. H., E. Gaines, Z. Sheller, A. Tong, A. Clapp, and I. Valiela. Diet
composition of juvenile horseshoe crabs: Implications for growth and
survival of natural and cultured stocks, p. 521-534. In J. Tanacredi, M.
Botton, D. Smith [eds.], Biology and conservation of horseshoe crabs.
Springer, New York.
2008
Carmichael, R. H., T. Hattenrath, I. Valiela, R. H. Michener. Nitrogen stable
isotopes in the shell of Mercenaria mercenaria trace wastewater inputs
from watersheds to estuarine ecosystems. Aquatic Biol. 4:99-111. pdf
Daskin, J. H., K. Calci, W. Burkhardt, III, and R. Carmichael. Use of N stable
isotope and alternative microbial analysis to define wastewater influence in
Mobile Bay, AL. Mar. Pollut. Bull. 56:860-868.
2007
Bowen, J., K. Kroeger, G. Tomasky, W. J. Pabich, , M. L. Cole, R. H. Carmichael,
I. Valiela. A review of land-estuary coupling by groundwater discharge to
New England estuaries: Mechanisms and effects. Applied Geochemistry.
22: 175-191.
2005
Carmichael, R. H. and I. Valiela. Coupling of near-bottom seston and surface
sediment composition: Changes with nutrient enrichment and implications
for estuarine food supply and biogeochemical processing. Limnol.
Oceanogr. 50: 97-105.
2004
Carmichael, R. H., A. Shriver, and I. Valiela. Changes in shell and soft tissue
growth, tissue composition, and survival of quahogs, Mercenaria
mercenaria, and softshell clams, Mya arenaria, in response to eutrophic-
driven changes in food supply and habitat. J. Exp. Mar. Biol. Ecol. 313:
75-104.
Rutecki, D., R. H. Carmichael, and I. Valiela. Magnitude of harvest of Atlantic
horseshoe crabs, Limulus polyphemus, in Pleasant Bay, MA. Estuaries 27:
179-187.
Carmichael, R. H., B. Annette, and I. Valiela. N loading to Pleasant Bay, Cape
Cod: Application of models and stable isotopes to detect incipient nutrient
enrichment of estuaries. Mar. Pollut. Bull. 48: 137-143.
Carmichael, R. H., D. Rutecki, B. Annett, E. Gaines, and I. Valiela. Position of
horseshoe crabs in estuarine food webs: N and C stable isotopic study of
foraging ranges and diet composition. J. Exp. Mar. Biol. Ecol. 299:
231-253.
2003
Carmichael, R. H., D. Rutecki, and I. Valiela. Abundance and population structure
of the Atlantic horseshoe crab, Limulus polyphemus, in Pleasant Bay, Cape
Cod. Mar. Ecol. Prog. Ser. 246: 225-239.
| Current
Graduate Students |
Post
Doctoral Associates |
Technicians |
Heather Patterson, Ph.D.
Allen Aven, Ph.D.
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Nicole Taylor |
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